BMRB Entry 15950

Name: solution structure of E.Coli SlyD
Published: 2009-04-02

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PDB ID: 2k8i
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR15950
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: solution structure of E.Coli SlyD PubMed: 19356587

Deposition date: 2008-09-11 Original release date: 2009-04-02

Authors: Weininger, Ulrich; Balbach, Jochen

Citation: Weininger, Ulrich; Haupt, Caroline; Schweimer, Kristian; Graubner, Wenke; Kovermann, Michael; Bruser, Thomas; Scholz, Christian; Schaarschmidt, Peter; Zoldak, Gabriel; Schmid, Franz; Balbach, Jochen. "NMR Solution Structure of SlyD from Escherichia coli: Spatial Separation of Prolyl Isomerase and Chaperone Function" J. Mol. Biol. 387, 295-305 (2009).

Assembly members:
METHIONINE, polymer, 171 residues, 149.207 Da.

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):
METHIONINE: MKVAKDLVVSLAYQVRTEDG VLVDESPVSAPLDYLHGHGS LISGLETALEGHEVGDKFDV AVGANDAYGQYDENLVQRVP KDVFMGVDELQVGMRFLAET DQGPVPVEITAVEDDHVVVD GNHMLAGQNLKFNVEVVAIR EATEEELAHGHVHGAHDHHH DHDHDHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	676
15N chemical shifts	168
1H chemical shifts	1104

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	METHIONINE	1

Entities:

Entity 1, METHIONINE 171 residues - 149.207 Da.

1

MET

LYS

VAL

ALA

LYS

ASP

LEU

VAL

SER

2

LEU

ALA

TYR

GLN

VAL

ARG

THR

GLU

ASP

GLY

3

VAL

LEU

VAL

ASP

GLU

SER

PRO

VAL

SER

ALA

4

PRO

LEU

ASP

TYR

LEU

HIS

GLY

HIS

GLY

SER

5

LEU

ILE

SER

GLY

LEU

GLU

THR

ALA

LEU

GLU

6

GLY

HIS

GLU

VAL

GLY

ASP

LYS

PHE

ASP

VAL

7

ALA

VAL

GLY

ALA

ASN

ASP

ALA

TYR

GLY

GLN

8

TYR

ASP

GLU

ASN

LEU

VAL

GLN

ARG

VAL

PRO

9

LYS

ASP

VAL

PHE

MET

GLY

VAL

ASP

GLU

LEU

10

GLN

VAL

GLY

MET

ARG

PHE

LEU

ALA

GLU

THR

11

ASP

GLN

GLY

PRO

VAL

PRO

VAL

GLU

ILE

THR

12

ALA

VAL

GLU

ASP

HIS

VAL

ASP

13

GLY

ASN

HIS

MET

LEU

ALA

GLY

GLN

ASN

LEU

14

LYS

PHE

ASN

VAL

GLU

VAL

ALA

ILE

ARG

15

GLU

ALA

THR

GLU

LEU

ALA

HIS

GLY

16

HIS

VAL

HIS

GLY

ALA

HIS

ASP

HIS

17

ASP

HIS

ASP

HIS

ASP

HIS

18

HIS

Samples:

sample_1: entity_2, [U-13C; U-15N], 1 mM

sample_conditions_1: ionic strength: 0.1 M; pH: 7.4; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1

Software:

CNS, Brunger A. T. et.al. - refinement

NMR spectrometers:

Bruker Avance 800 MHz
Bruker Avance 700 MHz

BMRB	16240
PDB	2K8I 2KFW
DBJ	BAB37623 BAE77942 BAG79134 BAH65509 BAI27607
EMBL	CAA79705 CAD08158 CAP77801 CAQ33668 CAQ90798
GB	AAA18574 AAA58146 AAC41458 AAC76374 AAG58456
PIR	AB1004
REF	NP_312227 NP_417808 NP_458445 NP_462359 NP_709123
SP	P0A9K9 P0A9L0 P0A9L1 P0A9L2

Biological Magnetic Resonance Data Bank