BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules 		Member of WWPDB

BMRB Entry 16216

Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR16216

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry

Title: Solution structure of protein ITSN1 from Homo sapiens. Northeast Structural Genomics Consortium target HR5524A

Deposition date: 2009-03-16 Original release date: 2009-04-23

Authors: Wu, Yibing; Ghosh, Arindam; Shastry, Ritu; Hua, Jia; Ciccosanti, Colleen; Zhang, Qi; Jiang, Mei; Swapna, G.V.T.; Acton, T.B.; Xiao, Rong; Everett, J.K.; Montelione, G.T.; SZYPERSKI, THOMAS

Citation: Wu, Yibing; Ghosh, Arindam; Shastry, Ritu; Hua, Jia; Ciccosanti, Colleen; Zhang, Qi; Jiang, Mei; Swapna, G.V.T.; Acton, T.B.; Xiao, Rong; Everett, J.K.; Montelione, G.T.; SZYPERSKI, THOMAS. "Solution structure of protein ITSN1 from Homo sapiens. Northeast Structural Genomics Consortium target HR5524A"  Not known ., .-..

Assembly members:
ITSN1, polymer, 111 residues, 12614.523 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
ITSN1: PPVAEWAVPQSSRLKYRQLF NSHDKTMSGHLTGPQARTIL MQSSLPQAQLASIWNLSDID QDGKLTAEEFILAMHLIDVA MSGQPLPPVLPPEYIPPSFR RVRLEHHHHHH

Data sets:
Data typeCount
13C chemical shifts360
15N chemical shifts103
1H chemical shifts749

Time Domain Data

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1ITSN11

Entities:

Entity 1, ITSN1 111 residues - 12614.523 Da.

1   PROPROVALALAGLUTRPALAVALPROGLN
2   SERSERARGLEULYSTYRARGGLNLEUPHE
3   ASNSERHISASPLYSTHRMETSERGLYHIS
4   LEUTHRGLYPROGLNALAARGTHRILELEU
5   METGLNSERSERLEUPROGLNALAGLNLEU
6   ALASERILETRPASNLEUSERASPILEASP
7   GLNASPGLYLYSLEUTHRALAGLUGLUPHE
8   ILELEUALAMETHISLEUILEASPVALALA
9   METSERGLYGLNPROLEUPROPROVALLEU
10   PROPROGLUTYRILEPROPROSERPHEARG
11   ARGVALARGLEUGLUHISHISHISHISHIS
12   HIS

Samples:

sample_1: entity, [U-100% 13C; U-100% 15N], 1.0 mM; H2O 90%; D2O 10%

sample_2: entity, [U-5% 13C; U-99% 15N], 1.0 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 0.2 M; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_2isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
4,3D, GFT HNNCABCAsample_1isotropicsample_conditions_1
4,3D, GFT CABCACONNHsample_1isotropicsample_conditions_1
4,3D, GFT HCCH COSYsample_1isotropicsample_conditions_1
3D, 15N-13C RESOLVED SIMULTANEOUS NOESYsample_1isotropicsample_conditions_1

Software:

AutoAssign, Zimmerman, Moseley, Kulikowski and Montelione - chemical shift assignment

AutoStruct, Huang, Tejero, Powers and Montelione - structure solution

CYANA, Guntert, Mumenthaler and Wuthrich - structure solution

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

TALOS, Cornilescu, Delaglio and Bax - structure solution

XEASY, Bartels et al. - peak picking

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Varian INOVA 750 MHz
  • Varian INOVA 600 MHz

Related Database Links:

PDB
EMBL CAD98050
GB ACE60215 ADF97294 ADF97295 ELW62068 EQB78493
REF XP_006523000 XP_007962709 XP_008273162 XP_008944090 XP_009508108

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts