BMRB Entry 30603
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR30603
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Title: Solution structure of VEK50 in the bound form with plasminogen kringle 2
Deposition date: 2019-04-25 Original release date: 2019-07-18
Authors: Yuan, Y.; Castellino, F.
Citation: Yuan, Y.; Ploplis, V.; Lee, S.; Castellino, F.. "Solution structural model of the complex of the binding regions of human plasminogen with its M-protein receptor from Streptococcal pyogenes" . ., .-..
Assembly members:
entity_1, polymer, 52 residues, 6173.791 Da.
Natural source: Common Name: Streptococcus pyogenes Taxonomy ID: 1314 Superkingdom: Bacteria Kingdom: not available Genus/species: Streptococcus pyogenes
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
entity_1: GSVEKLTADAELQRLKNERH
EEAELERLKSERHDHDKKEA
ERKALEDKLADY
- assigned_chemical_shifts
- spectral_peak_list
| Data type | Count |
| 13C chemical shifts | 173 |
| 15N chemical shifts | 50 |
| 1H chemical shifts | 268 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | entity_1 | 1 |
Entities:
Entity 1, entity_1 52 residues - 6173.791 Da.
| 1 | GLY | SER | VAL | GLU | LYS | LEU | THR | ALA | ASP | ALA | ||||
| 2 | GLU | LEU | GLN | ARG | LEU | LYS | ASN | GLU | ARG | HIS | ||||
| 3 | GLU | GLU | ALA | GLU | LEU | GLU | ARG | LEU | LYS | SER | ||||
| 4 | GLU | ARG | HIS | ASP | HIS | ASP | LYS | LYS | GLU | ALA | ||||
| 5 | GLU | ARG | LYS | ALA | LEU | GLU | ASP | LYS | LEU | ALA | ||||
| 6 | ASP | TYR |
Samples:
sample_1: VEK50, [U-99% 13C; U-99% 15N], 0.5 ± 0.1 mM; Kringle 2 1.5 ± 0.1 mM; DSS 2 ug/mL; Bis-Tris-d19, [U-2H], 20 mM; sodium azide 2 ug/mL
sample_conditions_1: ionic strength: 20 mM; pH: 6.8; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D C(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCA | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HBHA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
Software:
TopSpin, Bruker Biospin - collection
Sparky, Goddard - data analysis
CS-ROSETTA, Shen, Vernon, Baker and Bax - structure calculation
X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement
NMR spectrometers:
- Bruker Avance 800 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts