BMRB Entry 4457
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4457
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry
Title: Sequence-specific assignments and partial unfolding of extracellular domains II and III of E-cadherin.
Deposition date: 1999-11-15 Original release date: 2000-03-17
Authors: Alattia, Jean-Rene; Tong, Frances; Tong, Kit; Ikura, Mitsuhiko
Citation: Alattia, Jean-Rene; Tong, Frances; Tong, Kit; Ikura, Mitsuhiko. "Letter to the Editor: Sequence-specific resonance assignments and partial unfolding of extracellular domains II and III of E-cadherin" J. Biomol. NMR 16, 181-182 (2000).
Assembly members:
Epithelial Cadherin, polymer, 227 residues, 24355 Da.
Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
Epithelial Cadherin: GSMTQEVFEGSVAEGAVPGT
SVMKVSATDADDDVNTYNAA
IAYTIVSQDPELPHKNMFTV
NRDTGVISVLTSGLDRESYP
TYTLVVQAADLQGEGLSTTA
KAVITVKDINDNAPVFNPST
YQGQVPENEVNARIATLKVT
DDDAPNTPAWKAVYTVVNDP
DQQFVVVTDPTTNDGILKTA
KGLDFEAKQQYILHVRVENE
EPFEGSLVPSTATVTVDVVD
VNEAPIF
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 332 |
| 13C chemical shifts | 321 |
| 15N chemical shifts | 167 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | E-cadherin domains 2-3 | 1 |
Entities:
Entity 1, E-cadherin domains 2-3 227 residues - 24355 Da.
| 1 | GLY | SER | MET | THR | GLN | GLU | VAL | PHE | GLU | GLY | ||||
| 2 | SER | VAL | ALA | GLU | GLY | ALA | VAL | PRO | GLY | THR | ||||
| 3 | SER | VAL | MET | LYS | VAL | SER | ALA | THR | ASP | ALA | ||||
| 4 | ASP | ASP | ASP | VAL | ASN | THR | TYR | ASN | ALA | ALA | ||||
| 5 | ILE | ALA | TYR | THR | ILE | VAL | SER | GLN | ASP | PRO | ||||
| 6 | GLU | LEU | PRO | HIS | LYS | ASN | MET | PHE | THR | VAL | ||||
| 7 | ASN | ARG | ASP | THR | GLY | VAL | ILE | SER | VAL | LEU | ||||
| 8 | THR | SER | GLY | LEU | ASP | ARG | GLU | SER | TYR | PRO | ||||
| 9 | THR | TYR | THR | LEU | VAL | VAL | GLN | ALA | ALA | ASP | ||||
| 10 | LEU | GLN | GLY | GLU | GLY | LEU | SER | THR | THR | ALA | ||||
| 11 | LYS | ALA | VAL | ILE | THR | VAL | LYS | ASP | ILE | ASN | ||||
| 12 | ASP | ASN | ALA | PRO | VAL | PHE | ASN | PRO | SER | THR | ||||
| 13 | TYR | GLN | GLY | GLN | VAL | PRO | GLU | ASN | GLU | VAL | ||||
| 14 | ASN | ALA | ARG | ILE | ALA | THR | LEU | LYS | VAL | THR | ||||
| 15 | ASP | ASP | ASP | ALA | PRO | ASN | THR | PRO | ALA | TRP | ||||
| 16 | LYS | ALA | VAL | TYR | THR | VAL | VAL | ASN | ASP | PRO | ||||
| 17 | ASP | GLN | GLN | PHE | VAL | VAL | VAL | THR | ASP | PRO | ||||
| 18 | THR | THR | ASN | ASP | GLY | ILE | LEU | LYS | THR | ALA | ||||
| 19 | LYS | GLY | LEU | ASP | PHE | GLU | ALA | LYS | GLN | GLN | ||||
| 20 | TYR | ILE | LEU | HIS | VAL | ARG | VAL | GLU | ASN | GLU | ||||
| 21 | GLU | PRO | PHE | GLU | GLY | SER | LEU | VAL | PRO | SER | ||||
| 22 | THR | ALA | THR | VAL | THR | VAL | ASP | VAL | VAL | ASP | ||||
| 23 | VAL | ASN | GLU | ALA | PRO | ILE | PHE |
Samples:
ec23_274c: Epithelial Cadherin 2.0 mM
cond_274c: pH: 7.4; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 1H-15N NOESY | not available | not available | not available |
| 1H-15N DIPSI | not available | not available | not available |
| HBCBCACONNH | not available | not available | not available |
| HNCACB | not available | not available | not available |
| HNCO | not available | not available | not available |
| HBCBCACOCAHA | not available | not available | not available |
| HCCH-TOCSY | not available | not available | not available |
| CCCTOCSY_NNH | not available | not available | not available |
| 15N-13C NOESY | not available | not available | not available |
Software:
nmrPipe - Data processing
nmrview v3.0b4 - Assignment
NMR spectrometers:
- Varian Inova 500 MHz
- Varian Inova 600 MHz
Related Database Links:
| REF | NP_033994.1 |
| SWISS-PROT | P09803 |
| GenBank | EDL11373.1 AAH98501.1 EDL11372.1 |
| PRF | 1312359A |
| EMBL | CAA29488.1 CAA43292.1 CAA29645.1 |
| PDB |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts