BMRB Entry 6382

Name: 1H, 13C, and 15N Chemical Shift Assignments for Xenopus prion protein.
Published: 2005-04-08

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6382

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: 1H, 13C, and 15N Chemical Shift Assignments for Xenopus prion protein.

Deposition date: 2004-11-10 Original release date: 2005-04-08

Authors: Perez, Daniel; Wuthrich, Kurt

Citation: Perez, Daniel; Wuthrich, Kurt. "NMR assignment of the Xenopus leavis prion protein fragment xlPrP(98-226)" J. Biomol. NMR 31, 260-260 (2005).

Assembly members:
prion, polymer, 130 residues, Formula weight is not available

Natural source: Common Name: African clawed frog Taxonomy ID: 8355 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Xenopus leavis

Experimental source: Production method: recombinant technology Host organism: Eschericia coli

Entity Sequences (FASTA):
prion: GSGYNKQWKPPKSKTNMKSV AIGAAAGAIGGYMLGNAVGR MSYQFNNPMESRYYNDYYNQ MPNRVYRPMYRGEEYVSEDR FVRDCYNMSVTEYIIKPAEG KNNSELNQLDTTVKSQIIRE MCITEYRRGS

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	416
15N chemical shifts	150
1H chemical shifts	908

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	prion protein	1

Entities:

Entity 1, prion protein 130 residues - Formula weight is not available

1	GLY	SER	GLY	TYR	ASN	LYS	GLN	TRP	LYS	PRO
2	PRO	LYS	SER	LYS	THR	ASN	MET	LYS	SER	VAL
3	ALA	ILE	GLY	ALA	ALA	ALA	GLY	ALA	ILE	GLY
4	GLY	TYR	MET	LEU	GLY	ASN	ALA	VAL	GLY	ARG
5	MET	SER	TYR	GLN	PHE	ASN	ASN	PRO	MET	GLU
6	SER	ARG	TYR	TYR	ASN	ASP	TYR	TYR	ASN	GLN
7	MET	PRO	ASN	ARG	VAL	TYR	ARG	PRO	MET	TYR
8	ARG	GLY	GLU	GLU	TYR	VAL	SER	GLU	ASP	ARG
9	PHE	VAL	ARG	ASP	CYS	TYR	ASN	MET	SER	VAL
10	THR	GLU	TYR	ILE	ILE	LYS	PRO	ALA	GLU	GLY
11	LYS	ASN	ASN	SER	GLU	LEU	ASN	GLN	LEU	ASP
12	THR	THR	VAL	LYS	SER	GLN	ILE	ILE	ARG	GLU
13	MET	CYS	ILE	THR	GLU	TYR	ARG	ARG	GLY	SER

Samples:

sample_1: prion, [U-13C; U-15N], 1 mM

conditions_1: pH: 4.5; temperature: 293.15 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCA	sample_1	not available	conditions_1
HNCACB	sample_1	not available	conditions_1
CBCACONH	sample_1	not available	conditions_1
HCcH TOCSY	sample_1	not available	conditions_1
HCcH COSY	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Bruker DRX 500 MHz
Bruker DRX 600 MHz

PDB	1XU0
EMBL	CAC86159
GB	AAH94089 AAV54126
REF	NP_001082180

Biological Magnetic Resonance Data Bank