BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 6388

Title: NMR structure of the synthetic penaeidin 4   PubMed: 15699044

Authors: Cuthbertson, B.; Yang, Y.; Bullesbach, E.; Bachere, E.; Gross, P.; Aumelas, A.

Citation: Cuthbertson, B.; Yang, Y.; Bachere, E.; Bullesbach, E.; Gross, P.; Aumelas, A.. "Solution structure of synthetic penaeidin-4 with structural and functional comparisons to penaeidin-3"  J. Biol. Chem. 280, 16009-16018 (2005).

Assembly members:
penaeidin-4, polymer, 47 residues, 5297.2 Da.

Natural source:   Common Name: white shrimp   Taxonomy ID: 64468   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Litopenaeus setiferus

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
penaeidin-4: HSSGYTRPLRKPSRPIFIRP IGCDVCYGIPSSTARLCCFR YGDCCHX

Data sets:
Data typeCount
1H chemical shifts280

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1penaeidin-41

Entities:

Entity 1, penaeidin-4 47 residues - 5297.2 Da.

1   HISSERSERGLYTYRTHRARGPROLEUARG
2   LYSPROSERARGPROILEPHEILEARGPRO
3   ILEGLYCYSASPVALCYSTYRGLYILEPRO
4   SERSERTHRALAARGLEUCYSCYSPHEARG
5   TYRGLYASPCYSCYSHISNLW

Samples:

sample_1: penaeidin-4 1 mM; H2O 95%; D2O 5%

sample_2: penaeidin-4 1 mM; D2O 99.98%

sample_cond_1: pH: 3.6; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
DQF-COSYnot availablenot availablesample_cond_1
TOCSYnot availablenot availablesample_cond_1
NOESYnot availablenot availablesample_cond_1

Software:

X-PLOR v3.8 - refinement, structure solution

XWINNMR v3.1 - collection, processing

GIFA v4 - processing

Insight vInsight97 - structure solution

NMR spectrometers:

  • Bruker AVANCE 500 MHz
  • Bruker AVANCE 600 MHz

Related Database Links:

PDB
GenBank AAK83455.1 AAK77540.1 AAX58699.1 ABA55000.1
SWISS-PROT Q962A7 Q95NT0