BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 6797

Title: NMR assignment of the outer membrane lipoprotein (OmlA) from Xanthomonas axonopodis pv citri   PubMed: 16596342

Authors: Vanini, Marina; Benedetti, Celso; Spisni, Alberto; Pertinhez, Thelma

Citation: Vanini, Marina; Benedetti, Celso; Spisni, Alberto; Pertinhez, Thelma. "NMR Assignment of the Outer Membrane Lipoprotein (OmlA) from Xanthomonas axonopodis pv citri."  J. Biomol. NMR 36, 34-34 (2006).

Assembly members:
OmlA, polymer, 118 residues, 13583.3 Da.

Natural source:   Common Name: Xanthomonas axonopodis pv citri   Taxonomy ID: 346   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Xanthomonas axonopodis pv citri

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
OmlA: MAGSGIIYKQPIYQGNLIKQ NAVEQLQVGQSKQQVSALLG TPSIPDPFHAQRWDYTSTQR VDRLARTEIKNFTVFFENEQ VVRWEGDYFPSQDEQLAKAA PKQFGRNLARDKKKQRGR

Data sets:
Data typeCount
13C chemical shifts530
15N chemical shifts139
1H chemical shifts843

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1OmlA1

Entities:

Entity 1, OmlA 118 residues - 13583.3 Da.

1   METALAGLYSERGLYILEILETYRLYSGLN
2   PROILETYRGLNGLYASNLEUILELYSGLN
3   ASNALAVALGLUGLNLEUGLNVALGLYGLN
4   SERLYSGLNGLNVALSERALALEULEUGLY
5   THRPROSERILEPROASPPROPHEHISALA
6   GLNARGTRPASPTYRTHRSERTHRGLNARG
7   VALASPARGLEUALAARGTHRGLUILELYS
8   ASNPHETHRVALPHEPHEGLUASNGLUGLN
9   VALVALARGTRPGLUGLYASPTYRPHEPRO
10   SERGLNASPGLUGLNLEUALALYSALAALA
11   PROLYSGLNPHEGLYARGASNLEUALAARG
12   ASPLYSLYSLYSGLNARGGLYARG

Samples:

sample_1: OmlA, [U-15N; U-13C], 0.3 mM; NaH2PO4 100 mM; nAn3 0.05%; D2O 5%; H2O 95%

conditions_1: pH: 5.8; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
1H15N13CAsample_1not availableconditions_1
HNCAnot availablenot availablenot available
HNCOCAnot availablenot availablenot available
HNCACBnot availablenot availablenot available
CBCACONHnot availablenot availablenot available
HNCOnot availablenot availablenot available
TOCSY-NHSQCnot availablenot availablenot available
NOESY-NHSQCnot availablenot availablenot available
HCCH-TOCSYnot availablenot availablenot available
HCCH-NOESYnot availablenot availablenot available

Software:

NMRView v5.0 -

NMR spectrometers:

  • Varian Inova 600 MHz
  • Varian Inova 500 MHz

Related Database Links:

PDB
EMBL CAJ23191 CCF66967 CCG35991 CDF62460 CDN18877
GB AAM36385 AEO41768 AGH77020 AGI08588 AJD68111
REF NP_641849 WP_003483624 WP_007964666 WP_007973263 WP_008577244