BMRB Entry 6883
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6883
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Title: Ufd1 PubMed: 16004872
Deposition date: 2005-11-02 Original release date: 2007-11-29
Authors: Park, sunghyouk; Isaacson, Rivka; Silver, Pamela; Wagner, Gerhard
Citation: Park, Sunghyouk; Isaacson, Rivka; Kim, P.; Silver, Pamela; Wagner, Gerhard. "Ufd1 exhibits the AAA-ATPase fold with two distinct ubiquitin interaction sites" Structure 13, 995-1005 (2005).
Assembly members:
Ufd1, polymer, 208 residues, Formula weight is not available
Natural source: Common Name: Baker Taxonomy ID: 4932 Superkingdom: not available Kingdom: not available Genus/species: Eukaryota Fungi
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
Ufd1: MFSGFSSFGGGNGFVNMPQT
FEEFFRCYPIAMMNDRIRKD
DANFGGKIFLPPSALSKLSM
LNIRYPMLFKLTANETGRVT
HGGVLEFIAEEGRVYLPQWM
METLGIQPGSLLQISSTDVP
LGQFVKLEPQSVDFLDISDP
KAVLENVLRNFSTLTVDDVI
EISYNGKTFKIKILEVKPES
SSKSICVIETDLVTDFAPPV
GYVEPDYK
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 755 |
| 15N chemical shifts | 187 |
| 1H chemical shifts | 1227 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Ufd1 | 1 |
Entities:
Entity 1, Ufd1 208 residues - Formula weight is not available
| 1 | MET | PHE | SER | GLY | PHE | SER | SER | PHE | GLY | GLY | ||||
| 2 | GLY | ASN | GLY | PHE | VAL | ASN | MET | PRO | GLN | THR | ||||
| 3 | PHE | GLU | GLU | PHE | PHE | ARG | CYS | TYR | PRO | ILE | ||||
| 4 | ALA | MET | MET | ASN | ASP | ARG | ILE | ARG | LYS | ASP | ||||
| 5 | ASP | ALA | ASN | PHE | GLY | GLY | LYS | ILE | PHE | LEU | ||||
| 6 | PRO | PRO | SER | ALA | LEU | SER | LYS | LEU | SER | MET | ||||
| 7 | LEU | ASN | ILE | ARG | TYR | PRO | MET | LEU | PHE | LYS | ||||
| 8 | LEU | THR | ALA | ASN | GLU | THR | GLY | ARG | VAL | THR | ||||
| 9 | HIS | GLY | GLY | VAL | LEU | GLU | PHE | ILE | ALA | GLU | ||||
| 10 | GLU | GLY | ARG | VAL | TYR | LEU | PRO | GLN | TRP | MET | ||||
| 11 | MET | GLU | THR | LEU | GLY | ILE | GLN | PRO | GLY | SER | ||||
| 12 | LEU | LEU | GLN | ILE | SER | SER | THR | ASP | VAL | PRO | ||||
| 13 | LEU | GLY | GLN | PHE | VAL | LYS | LEU | GLU | PRO | GLN | ||||
| 14 | SER | VAL | ASP | PHE | LEU | ASP | ILE | SER | ASP | PRO | ||||
| 15 | LYS | ALA | VAL | LEU | GLU | ASN | VAL | LEU | ARG | ASN | ||||
| 16 | PHE | SER | THR | LEU | THR | VAL | ASP | ASP | VAL | ILE | ||||
| 17 | GLU | ILE | SER | TYR | ASN | GLY | LYS | THR | PHE | LYS | ||||
| 18 | ILE | LYS | ILE | LEU | GLU | VAL | LYS | PRO | GLU | SER | ||||
| 19 | SER | SER | LYS | SER | ILE | CYS | VAL | ILE | GLU | THR | ||||
| 20 | ASP | LEU | VAL | THR | ASP | PHE | ALA | PRO | PRO | VAL | ||||
| 21 | GLY | TYR | VAL | GLU | PRO | ASP | TYR | LYS |
Samples:
sample_1: Ufd1, [U-13C; U-15N], 0.2 mM
conditions_1: temperature: 307 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 1H15N HSQC | sample_1 | not available | conditions_1 |
| HNCA | sample_1 | not available | conditions_1 |
| HNCACO | sample_1 | not available | conditions_1 |
| HNCO | sample_1 | not available | conditions_1 |
| HNCOCA | sample_1 | not available | conditions_1 |
Software:
No software information available
NMR spectrometers:
- Varian Inova 500 MHz
- Varian Inova 600 MHz
- Bruker ARX 500 MHz
- Bruker ARX 600 MHz
- Varian Unity` 750 MHz
Related Database Links:
| PDB | |
| DBJ | GAA23430 |
| EMBL | CAA97047 CAY79809 |
| GB | AAB46627 AAC49023 AAT92825 AAZ22463 AHY79412 |
| REF | NP_011562 |
| SP | P53044 |
| TPG | DAA08146 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts